Publications


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Publications authored with Layne T. Watson

New! Algorithm 1028: VTMOP: Solver for Blackbox Multiobjective Optimization Problems

Tyler Chang, Layne T. Watson
In ACM Transactions on Mathematical Software, 48 3: 1-34, 09/2022
Citatations: BibTeX

New! Dynamic System Diversification for Securing Cloud-based IoT Subnetworks

Layne T. Watson
In ACM Transactions on Autonomous and Adaptive Systems, 17 1-2: 1-23, 09/2022
Citatations: BibTeX

New! Modeling the temporal dynamics of master regulators and CtrA proteolysis in Caulobacter crescentus cell cycle

Layne T. Watson, Yang Cao, Minghan Chen
In PLOS Computational Biology, : , 01/2022
Citatations: BibTeX

New! Algorithm 1031: MQSI – Monotone Quintic Spline Interpolation

Thomas Lux, Layne T. Watson, Tyler Chang
In ACM Transactions on Mathematical Software, 49 1: 1-17, 03/2023
Citatations: BibTeX

New! Interpolation of sparse high-dimensional data

Thomas Lux, Layne T. Watson, Tyler Chang
In Numerical Algorithms, 88 : 281–313, 11/2020
Citatations: BibTeX

New! Prediction of High-Performance Computing Input/Output Variability and Its Application to Optimization for System Configurations

Thomas Lux, Tyler Chang, Layne T. Watson
In Cornell University, : , 12/2020
Citatations: BibTeX

New! Multiobjective Optimization of the Variability of the High-Performance Linpack Solver

Tyler Chang, Layne T. Watson
In Proceedings of the Winter Simulation Conference, (pp 3081-3092), 03/2021
Citatations: BibTeX

New! Managing computationally expensive blackbox multiobjective optimization problems with libensemble

Tyler Chang, Layne T. Watson, Thomas Lux
In Proceedings of the Spring Simulation Multiconference, (pp 1-12), 05/2020
Citatations: BibTeX

New! Algorithm 1012: DELAUNAYSPARSE: Interpolation via a Sparse Subset of the Delaunay Triangulation in Medium to High Dimensions

Tyler Chang, Layne T. Watson, Thomas Lux
In ACM Transactions on Mathematical Software, 46 4: 1-20, 11/2020
Citatations: BibTeX

New! Algorithm 1007: QNSTOP—Quasi-Newton Algorithm for Stochastic Optimization

Layne T. Watson
In ACM Transactions on Mathematical Software, 46 2: 1-20, 05/2020
Citatations: BibTeX

New! An Attack-Resilient Architecture for the Internet of Things

Layne T. Watson
In IEEE Transactions on Information Forensics and Security, 15 : 3940-3954, 05/2020
Citatations: BibTeX

New! Personal reflections on 50 years of scientific computing: 1967–2017

Layne T. Watson
In Parallel Emergent and Distributed Systems, 35 2: 209-215, 02/2020
Citatations: BibTeX

New! A half century of computing

Layne T. Watson
In Parallel Emergent and Distributed Systems, 35 2: 111, 02/2020
Citatations: BibTeX

New! Modeling I/O performance variability in high-performance computing systems using mixture distributions

Thomas Lux, Tyler Chang, Layne T. Watson
In Parallel and Distributed Computing, 139 : 87-98, 01/2020
Citatations: BibTeX

New! On Parallel Real-Time Security Improvement Using Mixed-Integer Programming

Layne T. Watson
In IEEE Access, 9 : 58824-58837, 04/2021
Citatations: BibTeX

New! Predictability of IP Address Allocations for Cloud Computing Platforms

Layne T. Watson
In IEEE Transactions on Information Forensics and Security, 15 : 500-511, 06/2019
Citatations: BibTeX

New! Human Apprenticeship Learning via Kernel-based Inverse Reinforcement Learning

Layne T. Watson
In Cornell University, : , 06/2021
Citatations: BibTeX

New! Quasi-Newton Stochastic Optimization Algorithm for Parameter Estimation of a Stochastic Model of the Budding Yeast Cell Cycle

Minghan Chen, Layne T. Watson, Clifford Shaffer
In IEEE/ACM Transactions on Computational Biology and Bioinformatics, 16 1: 301-311, 11/2017
Citatations: BibTeX

New! MOANA: Modeling and Analyzing I/O Variability in Parallel System Experimental Design

Thomas Lux, Layne T. Watson
In IEEE Transactions on Parallel and Distributed Systems, 30 8: 1843-1856, 01/2019
Citatations: BibTeX

New! Misery Digraphs: Delaying Intrusion Attacks in Obscure Clouds

Layne T. Watson
In IEEE Transactions on Information Forensics and Security, 13 6: 1361-1375, 12/2017
Citatations: BibTeX

New! Predictive modeling of I/O characteristics in high performance computing systems

Thomas Lux, Layne T. Watson, Tyler Chang
In Proceedings of the Article No. 8th Proceedings of the High Performance Computing Symposium, (pp 1-12), 04/2018
Citatations: BibTeX

New! High Performance Computing Symposium

Layne T. Watson, Masha Sosonkina
In Proceedings of the 4th Spring Simulation Multiconference, (pp ), 04/2018
Citatations: BibTeX

New! Predicting system performance by interpolation using a high-dimensional delaunay triangulation

Tyler Chang, Layne T. Watson, Thomas Lux
In Proceedings of the Article No.2th Spring Simulation Multiconference, (pp 1-12), 04/2018
Citatations: BibTeX

New! JigCell Model Connector: building large molecular network models from components

Layne T. Watson
In Simulation, 94 11: 993-1008, 02/2018
Citatations: BibTeX

New! Probability-one homotopy methods for constrained clustering

Layne T. Watson, Naren Ramakrishnan
In Journal of Computational and Applied Mathematics, 343 : 602-618, 12/2018
Citatations: BibTeX

New! Scaling constituent algorithms of a trend and change detection polyalgorithm

Layne T. Watson
In Proceedings of the Article No.6th High Performance Computing Symposium, (pp 1-12), 04/2017
Citatations: BibTeX

New! Global deterministic and stochastic optimization in a service oriented architecture

Tyler Chang, Layne T. Watson
In Proceedings of the Article No. 7th High Performance Computing Symposium, (pp 1-12), 04/2017
Citatations: BibTeX

New! Predicting network modules of cell cycle regulators using relative protein abundance statistics

Layne T. Watson
In BMC Systems Biology, 11 Article No.30: 1-24, 02/2017
Citatations: BibTeX

An improved probability-one homotopy map for tracking constrained clustering solutions

Layne T. Watson, Naren Ramakrishnan
In Proceedings of the ACM Spring Simulation Multiconference, (pp ), 04/2015
Citatations: BibTeX

Remark on Algorithm 897: VTDIRECT95: Serial and Parallel Codes for the Global Optimization Algorithm DIRECT

Masha Sosonkina, Layne T. Watson, Jian He
In ACM Transactions on Mathematical Software, 41 3: 22:1--22:2,
Citatations: BibTeX

Performance analysis of a novel GPU computation-to-core mapping scheme for robust facet image modeling

Layne T. Watson
In Journal of Real-Time Image Processing, 10 3: 485-500, 09/2015
Citatations: BibTeX

Aircraft Design Markup Language for Multidisciplinary Aircraft Design and Analysis

Layne T. Watson
In Aerospace Information Systems, 12 2: 267-283, 02/2015
Citatations: BibTeX

A Framework to Analyze the Performance of Load Balancing Schemes for Ensembles of Stochastic Simulations

Layne T. Watson, Clifford Shaffer, Yang Cao
In International Journal of Parallel Programming, 43 4: 597-630, 08/2015
Citatations: BibTeX

JigCell Run Manager (JC-RM): a tool for managing large sets of biochemical model parametrizations

Layne T. Watson, Clifford Shaffer
In BMC Systems Biology, 9 : 95,
Citatations: BibTeX

HMMvar-func: a new method for predicting the functional outcome of genetic variants

Layne T. Watson
In BMC Bioinformatics, 16 : 351:1--351:10, 10/2015
Citatations: BibTeX

UPS-indel: A better approach for finding indel redundancy

Layne T. Watson
In Proceedings of the IEEE IEEE Computational Advances in Bio and Medical Sciences, (pp ), 10/2016
Citatations: BibTeX

Security Optimization of Dynamic Networks with Probabilistic Graph Modeling and Linear Programming

Layne T. Watson
In IEEE Transactions on Dependable and Secure Computing, 13 4: 474-487, 12/2016
Citatations: BibTeX

Multiobjective optimization using an adaptive weighting scheme

Layne T. Watson
In Optimization Methods and Software, 31 1: 110-133, 01/2016
Citatations: BibTeX

Algorithm 777: HOMPACK90: A suite of Fortran 90 codes for globally convergent homotopy algorithms

Layne T. Watson, Maria Sosonkina, Robert Melville, Alexander P. Morgan, Homer Walker
In ACM Transactions on Mathematical Software, 23 4: 514-549, 12/1997
Citatations: BibTeX

Algorithm 897: VTDIRECT95: serial and parallel codes for the global optimization algorithm DIRECT

Jian He, Layne T. Watson, Masha Sosonkina
In ACM Transactions on Mathematical Software, 36 3: 1-24, 07/2009
Citatations: BibTeX

Semisupervised learning of hidden Markov models via a homotopy method

Shihao Ji, Layne T. Watson, Lawrence Carin
In IEEE Pattern Analysis and Machine Intelligence, 31 2: 275-287, 03/2008
Citatations: BibTeX

Reverse engineering dynamic temporal models of biological processes and their relationships

Naren Ramakrishnan, Satish Tadepalli, Layne T. Watson, Richard F Helm, Marco Antoniotti, Bud Mishra
In Proceedings of the National Academy of Sciences, 107 28: , 05/2010
Citatations: BibTeX

Scatter/gather clustering: flexibly incorporating user feedback to steer clustering results

M. Shahriar Hossain, Praveen Kumar Reddy Ojili, Cindy Grimm, Rolf Muller, Layne T. Watson, Naren Ramakrishnan
In IEEE Trans. Visualization and Computer Graphics, 18 12: , 12/2012
Citatations: BibTeX

How to “alternatize” a clustering algorithm

M. Shahriar Hossain, Naren Ramakrishnan, Ian Davidson, Layne T. Watson
In Proceedings of the 2nd IEEE International Conference on Data Mining, (pp 193--224), 09/2013
Citatations: BibTeX

AutoLCA: A Framework for Sustainable Redesign and Assessment of Products

M. Shahriar Hossain, Manish Marwah, Amip Shah, Layne T. Watson, Naren Ramakrishnan
In ACM Transactions on Intelligent Systems and Technology (TIST), 5 2: 1--21, 04/2014
Citatations: BibTeX

Integrated Computing Environments for Watershed Management

Layne T. Watson, Vinod K. Lohani, David F. Kibler, Randel L. Dymond, Naren Ramakrishnan, Clifford Shaffer
In Computer, 16 4: 259--268, 10/2002
Citatations: BibTeX